PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G047200.1
Common NameB456_002G047200, LOC105776786
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 297aa    MW: 32168.7 Da    PI: 5.1814
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G047200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.1e-07447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ +e  e++  C  ++  lC  C +++H        H++vpl
  Gorai.002G047200.1  4 QCNVCEAAEAKVLCCADEAALCWACDEKIHAAnklaskHQRVPL 47
                        6******99*********************66899999999986 PP

2zf-B_box28.62.9e-095294137
            zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        s+++kC+ ++e    +fC +++ llC++C +++H        H
  Gorai.002G047200.1 52 SQMPKCDICQEASGFFFCLQDRALLCRKCDVAIHTAnpyvssH 94
                        689*********9*********************555556556 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665147IPR000315B-box-type zinc finger
CDDcd000211.36E-8347No hitNo description
SMARTSM003369.5E-11447IPR000315B-box-type zinc finger
SMARTSM003364.7E-165299IPR000315B-box-type zinc finger
PROSITE profilePS501199.0725299IPR000315B-box-type zinc finger
PfamPF006436.9E-75394IPR000315B-box-type zinc finger
CDDcd000211.78E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRIQCNVCEA AEAKVLCCAD EAALCWACDE KIHAANKLAS KHQRVPLSSS SSQMPKCDIC  60
QEASGFFFCL QDRALLCRKC DVAIHTANPY VSSHQRFLLT GVKVGLETTD PGASSSDVKS  120
PSSEKTSETK TNSTSRRAAP MAFTGGYNEV LPSNLGDVNN ELTKVTYAGG STAGSIQSWQ  180
MDDIFGLTDF NQSYGYMDDG SSKADSGKRG DSDSSSILRS ADDEVDDDER LGQVPDSSWA  240
VPQLPSPPTA SGLYWPNDSR DQCDSVVFVP DICCSVMKNP FNSWRSGSNR KRRRHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289293RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455155.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-102BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0D2R0Q70.0A0A0D2R0Q7_G
STRINGPGSC0003DMT4000181961e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-95light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]